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bioinformatic_tool
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| Ambos lados, revisión anterior Revisión previa Próxima revisión | Revisión previa | ||
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bioinformatic_tool [2017/05/19 17:04] marenas |
bioinformatic_tool [2017/05/19 17:36] (actual) marenas [Protein Function Prediction and Domains search] |
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| Línea 5: | Línea 5: | ||
| [[http://prosite.expasy.org/ | Prosite]]: consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them | [[http://prosite.expasy.org/ | Prosite]]: consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them | ||
| - | [[http://pfam.sanger.ac.uk | The Pfam]] database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs) | + | [[http://xfam.org | The Pfam]] database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs) |
| [[http://www.cathdb.info | CATH:]]The CATH database is a free, publicly available online resource that provides information on the evolutionary relationships of protein domains. It was created in the mid-1990s by Professor Christine Orengo and colleagues, and continues to be developed by the Orengo group at University College London. | [[http://www.cathdb.info | CATH:]]The CATH database is a free, publicly available online resource that provides information on the evolutionary relationships of protein domains. It was created in the mid-1990s by Professor Christine Orengo and colleagues, and continues to be developed by the Orengo group at University College London. | ||
| Línea 14: | Línea 14: | ||
| [[http://supfam.org/SUPERFAMILY/ | SUPERFAMILY:]]SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes. | [[http://supfam.org/SUPERFAMILY/ | SUPERFAMILY:]]SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes. | ||
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| + | [[http://www.ebi.ac.uk/pdbe-site/pdbemotif/ | PDBeMotif]] is an extremely fast and powerful search tool that facilitates exploration of the Protein Data Bank (PDB) by combining protein sequence, chemical structure and 3D data in a single search. Currently it is the only tool that offers this kind of integration at this speed. PDBeMotif can be used to examine the characteristics of the binding sites of single proteins or classes of proteins such as Kinases and the conserved structural features of their immediate environments either within the same specie or across different species. | ||
| [[http://zhanglab.ccmb.med.umich.edu/COFACTOR/ | COFACTOR]]: structure-based function predictions | [[http://zhanglab.ccmb.med.umich.edu/COFACTOR/ | COFACTOR]]: structure-based function predictions | ||
bioinformatic_tool.1495227891.txt.gz · Última modificación: 2017/05/19 17:04 por marenas
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