[[http://bioinfo.ggc.org/bindn/ | BindN]] for prediction of DNA and RNA binding residues in proteins

[[http://bindr.gdcb.iastate.edu/RNABindR/ | RNABindR:]]  software for prediction of RNA binding residues in proteins

[[http://lcg.rit.albany.edu/dp-bind/ | DP-Bind:]] a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins. 

[[http://gibk26.bse.kyutech.ac.jp/jouhou/shandar/netasa/dbs-pred/ | DBS-PRED:]] Prediction of DNA-binding in proteins using Neural Networks 

[[http://gibk21.bse.kyutech.ac.jp/dbs-pssm/ | DBS-PSSM]] (Version 3; December 2007 update): Prediction of DNA-binding residues by evolutionary profile and neural networks.

[[http://www.cbi.seu.edu.cn/DNABR/ | DNABR:]] platform for DNA binding residues in proteins

[[http://dnasite.limlab.ibms.sinica.edu.tw/ | DR_bind:]]predict the DNA-binding residues for a given protein chain

[[http://caps.ncbs.res.in/imot/iMOTserver.html | iMOT]] is an automated method for identifying conserved spatially interacting regions across proteins. 

[[http://haddock.science.uu.nl/enmr/services/HADDOCK/ | HADDOCK-Server :]] is an information-driven flexible docking approach for the modeling of biomolecular complexes.

[[http://www.nmr.chem.uu.nl/haddock/| HADDOCK:]]High Ambiguity Driven biomolecular Docking.

[[http://haddock.chem.uu.nl/|3D-DART:]] DNA Modeling Server

[[http://ef-site.hgc.jp/eF-site/index.jsp |eF-site Database:]]  Electrostatic surface of Functional-site 

[[http://www.poissonboltzmann.org/apbs/| Adaptive Poisson-Boltzmann Solver (APBS) ]]

[[http://turing.cs.iastate.edu/PredDNA/ | PredDNA]]

[[http://projects.biotec.tu-dresden.de/metadbsite/ | MetaDBSite:]]a meta web server for protein DNA-binding sites prediction based on protein sequence!