====== Structural Tools ======

[[http://projects.villa-bosch.de/dbase/molsurfer/submit.html | Molsurfer Map:]] The interface between 2 macromolecules (protein/dna/rna) will be mapped by adsi and molecular properties (excluding electrostatics) will be projected onto it.

[[http://pauli.utmb.edu/cgi-bin/get_a_form.tcl | Surface]] Area and Solvation Energy of Macromolecules

[[http://www.biochem.ucl.ac.uk/bsm/ligplot/ligplot.html | LIGPLOT:]] Program for automatically plotting protein-ligand 

[[http://honiglab.cpmc.columbia.edu/grasp/G_academic.html | GRASP:]] Graphical Representation and Analysis of Structural Properties

[[http://www.entelechon.com/bioinformatics/tools.php?lang=eng | Protein]] side chains relative solvent accessibility prediction

[[http://bioserv.rpbs.jussieu.fr/RPBS/cgi-bin/Ressource.cgi?chzn_lg=an&chzn_rsrc=CysState | CysState:]] Cysteines disulfide bonding state prediction from protein sequence

[[http://www.scripps.edu/~cdputnam/protcalc.html| Protein Molecular Weight Calculator]]

[[http://www.sciencegateway.org/tools/proteinmw.htm | Protein Molecular Weight Calculator]]

[[http://ekhidna.biocenter.helsinki.fi/dali_server/ | Protein Structure Database Searching by DaliLite v. 3]]
The Dali server is a network service for comparing protein structures in 3D. You submit the coordinates of a query protein structure and Dali compares them against those in the Protein Data Bank (PDB). You receive an email notification when the search has finished. In favourable cases, comparing 3D structures may reveal biologically interesting similarities that are not detectable by comparing sequences. 



====== APBS: Adaptive Poisson-Boltzmann Solver ======

[[http://www.poissonboltzmann.org/ | APBS]]

[[http://pdb2pqr.sourceforge.net/ | pdb2pqr]]

[[http://pdb2pqr-1.wustl.edu/pdb2pqr/ | PDB2PQR Server]]