Bioinformatics Tools

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====== Protein Function Prediction and motif search====== [[http://www.ebi.ac.uk/InterProScan/ | InterProScan:]] InterPro is a database of protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences [[http://prosite.expasy.org/ | Prosite]]: consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them [[http://zhanglab.ccmb.med.umich.edu/COFACTOR/ | COFACTOR]]: structure-based function predictions [[http://www.sbg.bio.ic.ac.uk/~mwass/combfunc/ | CombFunc:]] Protein Function Prediction Server [[http://www.ebi.ac.uk/thornton-srv/databases/ProFunc/ | The ProFunc server:]] had been developed to help identify the likely biochemical function of a protein from its three-dimensional structure. [[http://dragon.bio.purdue.edu/pfp/ | PFQ:]] Protein Function Prediction [[http://bioinf.fbb.msu.ru/SignalX/index.html |SignalX:]] Server for predictoin transcription factor binding sites. Search for a common signal in given set of sequences. [[http://zhanglab.ccmb.med.umich.edu/COFACTOR/ | COFACTOR:]] is a structure-based method for biological function annotation of protein molecules. [[https://www.predictprotein.org/ | PredicProtein:]] Protein Function Prediction Server (*Login Required) ====== Subcellular Localization Prediction Tools ====== [[http://www.cbs.dtu.dk/services/TargetP/ | TargetP:]] predicts the subcellular location of eukaryotic proteins [[http://mapman.mpimp-golm.mpg.de/general/slocx/ | SLocX]]: Subcellular Localization using gene eXpression [[http://www.cbs.dtu.dk/services/SignalP/ | SignalP 4.1:]] server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms [[http://abi.inf.uni-tuebingen.de/Services/MultiLoc2 | MultiLoc2:]] integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction [[http://proteomics.ysu.edu/tools/subcell.html | list]] of server for Subcellular Localization Prediction Tools