Bioinformatics Tools

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====== Protein - ligand interaction ====== [[http://mespeus.bch.ed.ac.uk/MESPEUS/ | MESPEUS:]]Metal Sites in Proteins - MESPEUS database [[http://dicsoft2.physics.iisc.ernet.in/cgi-bin/mips/query.pl | MIPS:]]Metal Interactions in Protein Structures [[http://www.charmm-gui.org/?doc=input/gbinding | The Ligand Binder:]] helps the user generate a series of CHARMM inputs to calculate a protein/ligand binding free energy. [[http://www.biosolveit.de/PoseView/ | PoseView:]] automatically generates high-quality 2D structure-diagrams of protein-ligand complexes provided as 3D-input. Such input may come directly from crystal structures or be computed for example by a docking program. [[http://poseview.zbh.uni-hamburg.de/poseview | Poseview on-line]] [[http://www.biochem.ucl.ac.uk/bsm/ligplot/ligplot.html | LIGPLOT:]] Program for automatically plotting protein-ligand [[http://metalweb.cerm.unifi.it/ | MetalPDB]] collects and allows easy access to the knowledge on metal sites in biological macromolecules, starting from the structural information contained in the Protein Data Bank (PDB) ====== Protein - Protein interaction ====== [[http://pipsa.eml.org/pipsa/pdbupload | webPIPSA:]] Protein Interaction Property Similarity Analysis