Bioinformatics Tools

Ensembl Genome Browser: Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. Ensembl is primarily funded by the Wellcome Trust.

DBD: Transcription factor prediction database

PROMO:is a virtual laboratory for the identification of putative transcription factor binding sites (TFBS) in DNA sequences from a species or groups of species of interest.

OTFBS: Over-represented Transcription Factor Binding Site Prediction Tool

Promoter2.0 predicts transcription start sites of vertebrate PolII promoters in DNA sequences. It has been developed as an evolution of simulated transcription factors that interact with sequences in promoter regions. It builds on principles that are common to neural networks and genetic algorithms.

Neural Network Promoter Prediction

@BIOSINO Neural Network Promoter Prediction Server