CAPRI: Critical Assessment of PRediction of Interactions

AutoDock is the most cited docking software — AutoDock

Hex Protein Docking:docking, protein docking, hex docking

ZDOCK: Protein Docking protein-protein docking

Rosetta Docking Software

GOLD Docking: GOLD Interactive Web Trial - Run real-time GOLD dockings and visualise the results. GOLD Interactive Web Tri 3D-Dock Suite

3D-Dock Suite

ArgusDock: the new drug docking code. Contains both the GADock and ArgusDock docking engines and the AScore scoring function with a preliminary set of parameters.

FlexX: BioSolveIT

Protein-DNA

protein docking web server

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